Package index

Common S3 Generics

S3 generics used by multiple packages having the same S3 method.

fit() tune() get_pos_class() get_model_classes() get_model_features() get_model_coef() get_model_type() get_model_params() calc_model_metrics() cross_validate() calc_predictions()

Common S3 Generics

Checking

Boolean logical testing of an object.

rep_lgl()

All Values Same

is_int_vec() is_logspace() is_monotonic() has_length() len_one() is_chr() is_dbl() is_lgl() is_int()

Logical Testing

Wrappers

Wrappers and alias functions.

logit() expit()

Logit and Expit Transformations

rn2col() col2rn() has_rn() rm_rn() set_rn() add_rowid()

Helpers for Working With Row Names

liter()

List Iteration

set_Names()

Set Names of an Object

Simple calculations

Various, simple, often used “calculation” utilities.

calc_ccc()

Calculate Concordance Correlation Coefficient

calc_qvalue() plot(<q_value>)

Calculate q-values

calc_ss()

Calculate the Sum of Squared Errors

fit() tune() get_pos_class() get_model_classes() get_model_features() get_model_coef() get_model_type() get_model_params() calc_model_metrics() cross_validate() calc_predictions()

Common S3 Generics

get_outliers()

Get Indices of Statistical Outliers

fit_gauss()

Calculate Robust Gaussian Estimates

p_value_FDR() plot(<fdr>)

Calculate Benjamini-Hochberg FDR Corrected Values

enrich_test()

Test for Enrichment

normal_k2_mixture() plot(<mix_k2>)

2-distribution (k2) Gaussian Mixture Model

Simple comparison

Compare vectors, calculate cross-tabulated counts and intersections of vector contents.

diff_vecs()

Diff Two Vectors

cross_tab()

Cross Tabulate Counts

Convert and Subset Objects

Converting classes to data frames and subsetting elements of objects.

add_class()

Add a Class to an Object

convert2df()

Convert R Objects to a Data Frame

keep_it() discard_it() compact_it()

Easily Subset Elements of Objects

File System Utilities

File system useful utilities inspired by the fs package.

helpr_path() as_helpr_path() is.dir() ls_dir() info_dir() file_ext() `file_ext<-`() rm_file_ext() set_file_ext() as_helpr_bytes()

File System Utilities

save_rds() save_rda() get_compression()

Save Compressed *.rds File

openR()

Open File Interactively

String Utilities

Simple utilities for manipulating strings inspired by the stringr package.

pad() squish() trim() capture()

Working with Strings

Interface Utilities

Generalized utilities for UI signaling and text output inspired by the usethis, cli, and crayon packages.

value() signal_done() signal_todo() signal_oops() signal_info() signal_rule() add_color() add_style print(<helpr_style>) `$`(<helpr_style>) has_style() rm_style()

Signal Feedback to the Console UI

symbl show_symbols()

A list of UTF-8 or ASCII symbols.

expect_error_free() skip_on_check() skip_on_test() expect_snapshot_plot()

Unit Test Helpers

give_praise()

Praise User

Formatting Utilities

Generalized utilities to facilitate consistency.

create_form()

Create A Formula

dater()

Standardize Date Format

write_text() read_text()

Write to a Text File

write_list()

Write List to CSV File

Handlers

For capturing errors and dealing with verbose function calls.

be_safe() be_quiet() be_hard()

Handle and Capture Side Effects

Grapes

Series of special, possibly useful, infix operators.

`%@@%` `%@@%<-`() `%==%` `%!=%` `%===%` `%set%` `%!set%` `%[[%`

Special Infix Operators

Library Mode

A reproducible way to install temporary, perhaps non-standard packages into a stable, reproducible environment for analysis by adding onto the R library tree.

lib_mode() lib_tree() is_lib_mode()

Activate and Deactivate Lib Mode