Package index • stabilityselectr

Stability Selection

Preform stability selection.

stability_selection() is_stab_sel() print(<stab_sel>) summary(<stab_sel>) plot(<stab_sel>): Stability Selection

Calculating FDR

Calculate the empirical false discovery rates (FDR) via permutations of the NULL model (randomized permutations).

calc_emp_fdr(): Calculate Empirical Number of False Positives

calc_emp_fdr_breaks(): Calculate Empirical FDR Break Points

Stable Features

Return the stable features at various probability thresholds.

get_stable_features() get_threshold_features(): Calculate Stable Features

Plotting Routines

Various plot traces of stability paths or cluster plots.

plot_emp_fdr() plot_permuted_data(): Plot Empirical FDR

progeny_cluster() is_pclust() plot(<pclust>) print(<pclust>): Perform Progeny Clustering

stability_selection() is_stab_sel() print(<stab_sel>) summary(<stab_sel>) plot(<stab_sel>): Stability Selection

Progeny and Stability Clustering

Preform progeny clustering and stability clustering.

progeny_cluster() is_pclust() plot(<pclust>) print(<pclust>): Perform Progeny Clustering

stability_cluster(): Perform Stability Clustering

Data

Two data sets with clustering structure.

clust_data progeny_data: Package Objects