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Package Objects

objects.Rd

Package Objects

Usage

clust_data

progeny_data

Format

clust_data: A 2 column data matrix containing the 2 features in the example, named "F1" and "F2", and containing 20 observations.

progeny_data: A 2 column data matrix containing 2 features, "F1" and "F2", 150 observations, and 3 clusters in bivariate space.

Source

clust_data: Hu, et. al.

progeny_data: Stu Field

Functions

  • clust_data: The original clustering example data from the Progeny Clustering paper. A 2 feature data set example (see references) in the example illustration in Figure 1, page 3.

  • progeny_data: A simulated clustering data set generated to contain 3 true clusters in bivariate space. There are 2 features, named "F1" and "F2" and 150 observations.

References

clust_data: Hu, C.W., Kornblau, S.M., Slater, J.H. and A.A. Qutub (2015). Progeny Clustering: A Method to Identify Biological Phenotypes. Scientific Reports, 5:12894. pg. 3. http://www.nature.com/articles/srep12894

See also

MASS::mvrnorm()

Examples

head(clust_data)
#>     F1   F2
#> 1 0.40 0.85
#> 2 0.98 0.24
#> 3 0.35 0.98
#> 4 0.62 0.08
#> 5 0.48 0.79
#> 6 0.63 0.38

plot(progeny_data, col = rep(2:4, each = 50L),
     pch = rep(16:18, each = 50L), cex = 1.75,
     main = "Simulated 3 Cluster Data")